STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A448YL80DEKNAAC102277. (94 aa)    
Predicted Functional Partners:
BRENAR_LOCUS94
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.981
A0A448YK70
Small nuclear ribonucleoprotein Sm D2.
   
 0.981
A0A448YS55
Small nuclear ribonucleoprotein Sm D3.
   
 0.981
A0A448YRY9
DEKNAAC105029.
   
 0.966
A0A448YFZ6
DEKNAAC100386.
   
 0.956
A0A448YM53
DEKNAAC103013.
   
 0.956
A0A448YQ69
DEKNAAC104299.
   
 0.956
A0A448YKD1
DEKNAAC102388.
   
 0.955
A0A448YTN4
DEKNAAC105486.
   
 0.955
A0A448YN55
DEKNAAC103719.
   
 0.953
Your Current Organism:
Brettanomyces naardenensis
NCBI taxonomy Id: 13370
Other names: ATCC 22075, B. naardenensis, CBS 6042, CCRC 21520, CCRC:21520, DBVPG 6712, Dekkera naardenensis, NRRL Y-17526
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.