STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAD54067.1L-proline glycine betaine ABC transport system permease protein ProW. (276 aa)    
Predicted Functional Partners:
GAD54066.1
L-proline glycine betaine binding ABC transporter protein ProX.
 
 0.999
GAD54068.1
L-proline glycine betaine ABC transport system permease protein ProV.
 0.999
GAD57184.1
L-proline glycine betaine ABC transport system permease protein ProV.
 0.990
GAD57459.1
L-proline glycine betaine ABC transport system permease protein ProV.
 0.990
GAD56210.1
L-proline glycine betaine binding ABC transporter protein ProX.
 
 0.962
GAD57458.1
ABC transporter substrate-binding protein.
 
 
 0.890
GAD57187.1
L-proline glycine betaine binding ABC transporter protein ProX.
 
 0.838
GAD57186.1
L-proline glycine betaine binding ABC transporter protein ProX.
 
 
 0.824
GAD57188.1
L-proline glycine betaine binding ABC transporter protein ProX.
 
 
 0.731
betI
HTH-type transcriptional regulator BetI; Repressor involved in choline regulation of the bet genes.
 
     0.654
Your Current Organism:
Limimaricola cinnabarinus
NCBI taxonomy Id: 1337093
Other names: L. cinnabarinus LL-001, Limimaricola cinnabarinus LL-001, Loktanella cinnabarina LL-001, Loktanella sp. LL-001
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.