STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAD55204.1Hypothetical protein. (264 aa)    
Predicted Functional Partners:
GAD55206.1
Hypothetical protein.
 
     0.886
GAD55207.1
Hypothetical protein.
 
     0.842
GAD55205.1
Sucrose phosphate synthase.
 
     0.806
GAD54300.1
Peptidase, M23/M37 family.
   
   0.803
ribB
3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
    
  0.753
GAD55208.1
Glycosyltransferase.
  
     0.750
GAD57008.1
Hypothetical protein.
     
 0.668
GAD55203.1
Chromosome partition protein smc.
 
     0.660
GAD57051.1
Glycosyl transferase family 2.
  
     0.567
GAD55141.1
Hypothetical protein.
  
     0.554
Your Current Organism:
Limimaricola cinnabarinus
NCBI taxonomy Id: 1337093
Other names: L. cinnabarinus LL-001, Limimaricola cinnabarinus LL-001, Loktanella cinnabarina LL-001, Loktanella sp. LL-001
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.