STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SER14875.1Tfp pilus assembly protein PilF. (413 aa)    
Predicted Functional Partners:
SER14898.1
HupE / UreJ protein.
 
     0.952
SER14853.1
Protein of unknown function.
 
     0.897
SEQ85650.1
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB.
   
   0.868
SER27650.1
Two-component system, chemotaxis family, CheB/CheR fusion protein.
    
 0.588
ribB
3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
    
  0.578
SER75966.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
    
 0.553
SER06301.1
Hydrogenase/urease accessory protein HupE.
  
     0.541
SER09996.1
PAS domain S-box-containing protein.
    
 0.509
SER32084.1
Diguanylate cyclase (GGDEF) domain-containing protein.
    
  0.481
SEQ94615.1
Methyl-accepting chemotaxis protein.
    
  0.468
Your Current Organism:
Nitrosomonas sp. Nm51
NCBI taxonomy Id: 133720
Other names: N. sp. Nm51, Nitrosomonas sp. NM 51
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