Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SEQ78676.1 | SER08378.1 | SAMN05421690_1001148 | SAMN05421690_10087 | 23S rRNA pseudouridine1911/1915/1917 synthase; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family. | 23S rRNA pseudouridine2605 synthase; Belongs to the pseudouridine synthase RsuA family. | 0.739 |
SEQ78676.1 | SER24425.1 | SAMN05421690_1001148 | SAMN05421690_101419 | 23S rRNA pseudouridine1911/1915/1917 synthase; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family. | 23S rRNA pseudouridine955/2504/2580 synthase; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family. | 0.662 |
SEQ78676.1 | SER35894.1 | SAMN05421690_1001148 | SAMN05421690_102123 | 23S rRNA pseudouridine1911/1915/1917 synthase; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family. | 23S rRNA pseudouridine2457 synthase; Belongs to the pseudouridine synthase RsuA family. | 0.602 |
SEQ78676.1 | pheT | SAMN05421690_1001148 | SAMN05421690_10259 | 23S rRNA pseudouridine1911/1915/1917 synthase; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family. | phenylalanyl-tRNA synthetase beta chain; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily. | 0.532 |
SER08378.1 | SEQ78676.1 | SAMN05421690_10087 | SAMN05421690_1001148 | 23S rRNA pseudouridine2605 synthase; Belongs to the pseudouridine synthase RsuA family. | 23S rRNA pseudouridine1911/1915/1917 synthase; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family. | 0.739 |
SER08378.1 | SER15309.1 | SAMN05421690_10087 | SAMN05421690_101025 | 23S rRNA pseudouridine2605 synthase; Belongs to the pseudouridine synthase RsuA family. | Exodeoxyribonuclease-3. | 0.649 |
SER08378.1 | SER21802.1 | SAMN05421690_10087 | SAMN05421690_101318 | 23S rRNA pseudouridine2605 synthase; Belongs to the pseudouridine synthase RsuA family. | Segregation and condensation protein B; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves. | 0.606 |
SER08378.1 | SER24425.1 | SAMN05421690_10087 | SAMN05421690_101419 | 23S rRNA pseudouridine2605 synthase; Belongs to the pseudouridine synthase RsuA family. | 23S rRNA pseudouridine955/2504/2580 synthase; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family. | 0.802 |
SER08378.1 | SER26031.1 | SAMN05421690_10087 | SAMN05421690_101513 | 23S rRNA pseudouridine2605 synthase; Belongs to the pseudouridine synthase RsuA family. | Exodeoxyribonuclease-3. | 0.649 |
SER08378.1 | SER35894.1 | SAMN05421690_10087 | SAMN05421690_102123 | 23S rRNA pseudouridine2605 synthase; Belongs to the pseudouridine synthase RsuA family. | 23S rRNA pseudouridine2457 synthase; Belongs to the pseudouridine synthase RsuA family. | 0.483 |
SER08378.1 | cmk | SAMN05421690_10087 | SAMN05421690_102321 | 23S rRNA pseudouridine2605 synthase; Belongs to the pseudouridine synthase RsuA family. | 3-phosphoshikimate 1-carboxyvinyltransferase/cytidylate kinase. | 0.869 |
SER08378.1 | der | SAMN05421690_10087 | SAMN05421690_10524 | 23S rRNA pseudouridine2605 synthase; Belongs to the pseudouridine synthase RsuA family. | GTP-binding protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. | 0.828 |
SER08378.1 | pheT | SAMN05421690_10087 | SAMN05421690_10259 | 23S rRNA pseudouridine2605 synthase; Belongs to the pseudouridine synthase RsuA family. | phenylalanyl-tRNA synthetase beta chain; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily. | 0.431 |
SER15309.1 | SER08378.1 | SAMN05421690_101025 | SAMN05421690_10087 | Exodeoxyribonuclease-3. | 23S rRNA pseudouridine2605 synthase; Belongs to the pseudouridine synthase RsuA family. | 0.649 |
SER15309.1 | SER26031.1 | SAMN05421690_101025 | SAMN05421690_101513 | Exodeoxyribonuclease-3. | Exodeoxyribonuclease-3. | 0.919 |
SER15309.1 | SER35894.1 | SAMN05421690_101025 | SAMN05421690_102123 | Exodeoxyribonuclease-3. | 23S rRNA pseudouridine2457 synthase; Belongs to the pseudouridine synthase RsuA family. | 0.649 |
SER21802.1 | SER08378.1 | SAMN05421690_101318 | SAMN05421690_10087 | Segregation and condensation protein B; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves. | 23S rRNA pseudouridine2605 synthase; Belongs to the pseudouridine synthase RsuA family. | 0.606 |
SER21802.1 | SER35894.1 | SAMN05421690_101318 | SAMN05421690_102123 | Segregation and condensation protein B; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves. | 23S rRNA pseudouridine2457 synthase; Belongs to the pseudouridine synthase RsuA family. | 0.500 |
SER21802.1 | cmk | SAMN05421690_101318 | SAMN05421690_102321 | Segregation and condensation protein B; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves. | 3-phosphoshikimate 1-carboxyvinyltransferase/cytidylate kinase. | 0.824 |
SER21802.1 | der | SAMN05421690_101318 | SAMN05421690_10524 | Segregation and condensation protein B; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves. | GTP-binding protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. | 0.592 |
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