STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SER38908.1LysM domain-containing protein. (345 aa)    
Predicted Functional Partners:
SER37248.1
Type IV pilus assembly protein PilQ; Belongs to the bacterial secretin family.
  
 
   0.986
SER37293.1
Type IV pilus assembly protein PilO.
  
 
   0.966
SER37319.1
Type IV pilus assembly protein PilN.
  
 
   0.966
SER37333.1
Type IV pilus assembly protein PilM.
  
 
   0.966
SEQ95442.1
Hypothetical protein.
  
   0.957
SEQ99771.1
General secretion pathway protein D; Belongs to the bacterial secretin family.
  
 
   0.952
SEQ95625.1
Rhs element Vgr protein.
  
   0.907
SEQ95571.1
Hypothetical protein.
  
   0.905
SER47203.1
Hypothetical protein.
  
   0.905
SEQ95515.1
Hypothetical protein.
  
   0.903
Your Current Organism:
Nitrosomonas sp. Nm51
NCBI taxonomy Id: 133720
Other names: N. sp. Nm51, Nitrosomonas sp. NM 51
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.