Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SEQ75001.1 | SER41715.1 | SAMN05421690_100127 | SAMN05421690_102524 | Outer membrane lipoprotein-sorting protein. | N-acetylmuramoyl-L-alanine amidase. | 0.890 |
SEQ85650.1 | SER41715.1 | SAMN05421690_1002121 | SAMN05421690_102524 | Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB. | N-acetylmuramoyl-L-alanine amidase. | 0.731 |
SEQ89451.1 | SER13391.1 | SAMN05421690_100339 | SAMN05421690_100966 | Cell division protein FtsN. | Membrane-bound lytic murein transglycosylase B. | 0.486 |
SEQ89451.1 | SER41715.1 | SAMN05421690_100339 | SAMN05421690_102524 | Cell division protein FtsN. | N-acetylmuramoyl-L-alanine amidase. | 0.750 |
SEQ89451.1 | nagZ | SAMN05421690_100339 | SAMN05421690_100813 | Cell division protein FtsN. | beta-N-acetylhexosaminidase; Plays a role in peptidoglycan recycling by cleaving the terminal beta-1,4-linked N-acetylglucosamine (GlcNAc) from peptide- linked peptidoglycan fragments, giving rise to free GlcNAc, anhydro-N- acetylmuramic acid and anhydro-N-acetylmuramic acid-linked peptides. Belongs to the glycosyl hydrolase 3 family. NagZ subfamily. | 0.661 |
SEQ94822.1 | SER13391.1 | SAMN05421690_100434 | SAMN05421690_100966 | Lipoprotein Spr/probable lipoprotein NlpC. | Membrane-bound lytic murein transglycosylase B. | 0.511 |
SEQ94822.1 | SER20058.1 | SAMN05421690_100434 | SAMN05421690_101236 | Lipoprotein Spr/probable lipoprotein NlpC. | AmpD protein. | 0.699 |
SEQ94822.1 | SER41715.1 | SAMN05421690_100434 | SAMN05421690_102524 | Lipoprotein Spr/probable lipoprotein NlpC. | N-acetylmuramoyl-L-alanine amidase. | 0.698 |
SEQ94822.1 | nagZ | SAMN05421690_100434 | SAMN05421690_100813 | Lipoprotein Spr/probable lipoprotein NlpC. | beta-N-acetylhexosaminidase; Plays a role in peptidoglycan recycling by cleaving the terminal beta-1,4-linked N-acetylglucosamine (GlcNAc) from peptide- linked peptidoglycan fragments, giving rise to free GlcNAc, anhydro-N- acetylmuramic acid and anhydro-N-acetylmuramic acid-linked peptides. Belongs to the glycosyl hydrolase 3 family. NagZ subfamily. | 0.675 |
SER13391.1 | SEQ89451.1 | SAMN05421690_100966 | SAMN05421690_100339 | Membrane-bound lytic murein transglycosylase B. | Cell division protein FtsN. | 0.486 |
SER13391.1 | SEQ94822.1 | SAMN05421690_100966 | SAMN05421690_100434 | Membrane-bound lytic murein transglycosylase B. | Lipoprotein Spr/probable lipoprotein NlpC. | 0.511 |
SER13391.1 | SER20058.1 | SAMN05421690_100966 | SAMN05421690_101236 | Membrane-bound lytic murein transglycosylase B. | AmpD protein. | 0.742 |
SER13391.1 | SER41715.1 | SAMN05421690_100966 | SAMN05421690_102524 | Membrane-bound lytic murein transglycosylase B. | N-acetylmuramoyl-L-alanine amidase. | 0.757 |
SER13391.1 | nagZ | SAMN05421690_100966 | SAMN05421690_100813 | Membrane-bound lytic murein transglycosylase B. | beta-N-acetylhexosaminidase; Plays a role in peptidoglycan recycling by cleaving the terminal beta-1,4-linked N-acetylglucosamine (GlcNAc) from peptide- linked peptidoglycan fragments, giving rise to free GlcNAc, anhydro-N- acetylmuramic acid and anhydro-N-acetylmuramic acid-linked peptides. Belongs to the glycosyl hydrolase 3 family. NagZ subfamily. | 0.792 |
SER20058.1 | SEQ94822.1 | SAMN05421690_101236 | SAMN05421690_100434 | AmpD protein. | Lipoprotein Spr/probable lipoprotein NlpC. | 0.699 |
SER20058.1 | SER13391.1 | SAMN05421690_101236 | SAMN05421690_100966 | AmpD protein. | Membrane-bound lytic murein transglycosylase B. | 0.742 |
SER20058.1 | SER41715.1 | SAMN05421690_101236 | SAMN05421690_102524 | AmpD protein. | N-acetylmuramoyl-L-alanine amidase. | 0.669 |
SER20058.1 | nagZ | SAMN05421690_101236 | SAMN05421690_100813 | AmpD protein. | beta-N-acetylhexosaminidase; Plays a role in peptidoglycan recycling by cleaving the terminal beta-1,4-linked N-acetylglucosamine (GlcNAc) from peptide- linked peptidoglycan fragments, giving rise to free GlcNAc, anhydro-N- acetylmuramic acid and anhydro-N-acetylmuramic acid-linked peptides. Belongs to the glycosyl hydrolase 3 family. NagZ subfamily. | 0.810 |
SER41715.1 | SEQ75001.1 | SAMN05421690_102524 | SAMN05421690_100127 | N-acetylmuramoyl-L-alanine amidase. | Outer membrane lipoprotein-sorting protein. | 0.890 |
SER41715.1 | SEQ85650.1 | SAMN05421690_102524 | SAMN05421690_1002121 | N-acetylmuramoyl-L-alanine amidase. | Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB. | 0.731 |
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