Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDX88105.1 | SDX88135.1 | SAMN05421755_100152 | SAMN05421755_100153 | Protein of unknown function. | Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation. | 0.954 |
SDX88105.1 | SDY33015.1 | SAMN05421755_100152 | SAMN05421755_101635 | Protein of unknown function. | Outer membrane protein. | 0.674 |
SDX88105.1 | zapD | SAMN05421755_100152 | SAMN05421755_100742 | Protein of unknown function. | Cell division protein ZapD; Cell division factor that enhances FtsZ-ring assembly. Directly interacts with FtsZ and promotes bundling of FtsZ protofilaments, with a reduction in FtsZ GTPase activity. | 0.663 |
SDX88135.1 | SDX88105.1 | SAMN05421755_100153 | SAMN05421755_100152 | Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation. | Protein of unknown function. | 0.954 |
SDX88135.1 | SDY33015.1 | SAMN05421755_100153 | SAMN05421755_101635 | Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation. | Outer membrane protein. | 0.675 |
SDX88135.1 | zapD | SAMN05421755_100153 | SAMN05421755_100742 | Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation. | Cell division protein ZapD; Cell division factor that enhances FtsZ-ring assembly. Directly interacts with FtsZ and promotes bundling of FtsZ protofilaments, with a reduction in FtsZ GTPase activity. | 0.464 |
SDY32315.1 | SDY33015.1 | SAMN05421755_101613 | SAMN05421755_101635 | Outer membrane protein OmpA. | Outer membrane protein. | 0.800 |
SDY32955.1 | SDY33015.1 | SAMN05421755_101633 | SAMN05421755_101635 | Regulator of sigma E protease. | Outer membrane protein. | 0.894 |
SDY32955.1 | bamA | SAMN05421755_101633 | SAMN05421755_101634 | Regulator of sigma E protease. | Outer membrane protein insertion porin family; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. | 0.981 |
SDY32955.1 | fabZ | SAMN05421755_101633 | SAMN05421755_101636 | Regulator of sigma E protease. | 3-hydroxyacyl-[acyl-carrier-protein] dehydratase; Involved in unsaturated fatty acids biosynthesis. Catalyzes the dehydration of short chain beta-hydroxyacyl-ACPs and long chain saturated and unsaturated beta-hydroxyacyl-ACPs. | 0.737 |
SDY33015.1 | SDX88105.1 | SAMN05421755_101635 | SAMN05421755_100152 | Outer membrane protein. | Protein of unknown function. | 0.674 |
SDY33015.1 | SDX88135.1 | SAMN05421755_101635 | SAMN05421755_100153 | Outer membrane protein. | Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation. | 0.675 |
SDY33015.1 | SDY32315.1 | SAMN05421755_101635 | SAMN05421755_101613 | Outer membrane protein. | Outer membrane protein OmpA. | 0.800 |
SDY33015.1 | SDY32955.1 | SAMN05421755_101635 | SAMN05421755_101633 | Outer membrane protein. | Regulator of sigma E protease. | 0.894 |
SDY33015.1 | SDY73953.1 | SAMN05421755_101635 | SAMN05421755_10441 | Outer membrane protein. | Alginate export. | 0.656 |
SDY33015.1 | SDY79171.1 | SAMN05421755_101635 | SAMN05421755_104916 | Outer membrane protein. | Peptidoglycan-associated lipoprotein. | 0.800 |
SDY33015.1 | SDZ02207.1 | SAMN05421755_101635 | SAMN05421755_10855 | Outer membrane protein. | OmpA-OmpF porin, OOP family. | 0.800 |
SDY33015.1 | bamA | SAMN05421755_101635 | SAMN05421755_101634 | Outer membrane protein. | Outer membrane protein insertion porin family; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. | 0.979 |
SDY33015.1 | fabZ | SAMN05421755_101635 | SAMN05421755_101636 | Outer membrane protein. | 3-hydroxyacyl-[acyl-carrier-protein] dehydratase; Involved in unsaturated fatty acids biosynthesis. Catalyzes the dehydration of short chain beta-hydroxyacyl-ACPs and long chain saturated and unsaturated beta-hydroxyacyl-ACPs. | 0.783 |
SDY33015.1 | zapD | SAMN05421755_101635 | SAMN05421755_100742 | Outer membrane protein. | Cell division protein ZapD; Cell division factor that enhances FtsZ-ring assembly. Directly interacts with FtsZ and promotes bundling of FtsZ protofilaments, with a reduction in FtsZ GTPase activity. | 0.729 |
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