STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDY40222.1Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family. (79 aa)    
Predicted Functional Partners:
SDX92626.1
Hypothetical protein.
    
 
 0.820
SDY00425.1
Antitoxin HicB.
    
 
 0.820
SDY25444.1
Predicted nuclease of the RNAse H fold, HicB family.
    
 
 0.820
SDY43877.1
Predicted nuclease of the RNAse H fold, HicB family.
    
 
 0.820
SDY40245.1
Hypothetical protein.
       0.788
Your Current Organism:
Nitrosomonas sp. Nm33
NCBI taxonomy Id: 133724
Other names: N. sp. Nm33
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