STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OLS56856.12-hydroxyglutaryl-CoA dehydratase, D-component. (361 aa)    
Predicted Functional Partners:
hgdC_1
Activator of (R)-2-hydroxyglutaryl-CoA dehydratase.
   
 0.979
OLS56855.1
Hypothetical protein.
   
0.916
hgdC_5
Activator of (R)-2-hydroxyglutaryl-CoA dehydratase.
   
 0.706
minJ
Cell division topological determinant MinJ.
  
     0.627
OLS57399.1
Hypothetical protein.
   
0.625
hgdC_3
Activator of (R)-2-hydroxyglutaryl-CoA dehydratase.
   
 0.615
hpcB
3,4-dihydroxyphenylacetate 2,3-dioxygenase.
  
     0.605
OLS56109.1
sigmaK-factor processing regulatory protein BofA.
  
     0.544
fldI_1
R-phenyllactate dehydratase activator.
   
 0.543
OLS56869.1
Hypothetical protein.
  
     0.542
Your Current Organism:
Sporomusa sphaeroides
NCBI taxonomy Id: 1337886
Other names: S. sphaeroides DSM 2875, Sporomusa sphaeroides DSM 2875
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.