STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKG22279.1DNA phosphorothioation-associated methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (506 aa)    
Predicted Functional Partners:
AKG22280.1
DNA sulfur modification protein DndE; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.899
rpsE
30S ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family.
    
 0.851
AKG24520.1
Helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.776
AKG22161.1
SMC domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.767
AKG22160.1
Helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.764
AKG22215.1
DNA sulfur modification protein DndD; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.762
AKG22464.1
Phytoene synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.758
AKG22165.1
Sulfurtransferase DndC; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.756
AKG22162.1
Dnd system-associated protein 4; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.738
rpsL
30S ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit.
   
  0.725
Your Current Organism:
Calothrix sp. 3363
NCBI taxonomy Id: 1337936
Other names: C. sp. 336/3, Calothrix sp. 336/3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.