GCA_000482325_00313 protein (Bacillus sp. UNC438CL73TsuS30)

STRING allows inspection of the interaction evidence for any given network. Choose any of the viewers above (disabled if not applicable in your network).

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

GCA_000482325_00313

Unannotated protein. (410 aa)

Predicted Functional Partners:

GCA_000482325_00312

Unannotated protein.

0.688

GCA_000482325_04913

Unannotated protein.

0.593

GCA_000482325_04915

Unannotated protein.

0.562

Your Current Organism:

Bacillus sp. UNC438CL73TsuS30

NCBI taxonomy Id: 1340434
Other names: B. sp. UNC438CL73TsuS30

Basic Settings

Network type:

full STRING network

( the edges indicate both functional and physical protein associations )

physical subnetwork

( the edges indicate that the proteins are part of a physical complex )

meaning of network edges:

evidence

( line color indicates the type of interaction evidence )

confidence

( line thickness indicates the strength of data support )

active interaction sources:

Textmining

Experiments

Databases

Co‑expression

Neighborhood

Gene Fusion

Co‑occurrence

minimum required interaction score:

confidence:

max number of interactors to show:

1st shell:

max interactors:

2nd shell:

max interactors:

Update

Advanced Settings

network display mode:

static png

( network is a simple bitmap image; not interactive )

interactive svg

( network is a scalable vector graphic [SVG]; interactive )

network display options:

Enable node coloring mode

enable 3D bubble design

disable structure previews inside network bubbles

center protein names on nodes

show your query protein names

hide disconnected nodes in the network

hide protein names

protein name font size

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
GCA_000482325_00312	GCA_000482325_00313	Unannotated protein.	Unannotated protein.	0.688
GCA_000482325_00313	GCA_000482325_00312	Unannotated protein.	Unannotated protein.	0.688
GCA_000482325_00313	GCA_000482325_04913	Unannotated protein.	Unannotated protein.	0.593
GCA_000482325_00313	GCA_000482325_04915	Unannotated protein.	Unannotated protein.	0.562
GCA_000482325_04913	GCA_000482325_00313	Unannotated protein.	Unannotated protein.	0.593
GCA_000482325_04915	GCA_000482325_00313	Unannotated protein.	Unannotated protein.	0.562

Network Stats

Network Stats analysis is still ongoing, please wait ...

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Enrichment analysis is still ongoing, please wait ...

Enrichment display settings

Enrichment analysis is still ongoing, please wait ...

Clustering Options

no clustering

( show network as is )

k-means clustering

( find a defined number of clusters based on their centroids )

number of clusters:

edges between clusters:

MCL clustering

( find natural clusters based on the stochastic flow )

inflation parameter:

edges between clusters:

DBSCAN clustering

( find clusters based on the local node density )

epsilon parameter:

edges between clusters:

k-means (obsolete)

( legacy version of k-means algorithm )

number of clusters:

edges between clusters:

Server load: low (28%) [HD]

Permalink

SIB - Swiss Institute of Bioinformatics
CPR - Novo Nordisk Foundation Center Protein Research
EMBL - European Molecular Biology Laboratory

Credits

Funding
Datasources
Partners
Software

Access

Versions
APIs
Licensing
Usage

Info

Scores
Use scenarios
FAQs
Cookies/Privacy

About

Content
References
People
Statistics

STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.

Network

Neighborhood

Experiments

Cooccurrence

Databases

Coexpression

Textmining

Fusion

© STRING Consortium 2024

Credits

Access

Info

About