STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A3F3Q303Uncharacterized protein. (283 aa)    
Predicted Functional Partners:
A0A3F3Q9D9
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.795
A0A3F3PNC9
RNA polymerase, subunit omega/K/RPB6.
    
 0.787
A0A3F3PZ59
DNA-directed RNA polymerase.
    
 0.787
A0A3F3Q1A1
Uncharacterized protein.
    
 0.787
A0A3F3Q2E3
RNA polymerase.
    
 0.787
A0A3F3Q8I4
RPOL9 domain-containing protein.
    
 0.787
A0A3F3Q8V7
DNA-directed RNA polymerase, subunit N/Rpb10.
    
 0.787
A0A3F3QEJ5
DNA directed RNA polymerase.
    
 0.787
A0A3F3PNE2
DNA-directed RNA polymerase.
    
 0.786
A0A3F3Q7L4
Transcription elongation factor SPT4; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene.
    
 0.781
Your Current Organism:
Aspergillus welwitschiae
NCBI taxonomy Id: 1341132
Other names: A. welwitschiae, Aspergillus welwitschiae (Bres.) Henn., CBS 139.54, Ustilago welwitschiae
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