STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ESU28309.1Cytochrome cbb3 oxidase maturation protein CcoH. (148 aa)    
Predicted Functional Partners:
ESU28313.1
Cytochrome c oxidase subunit CcoN / Cytochrome c oxidase subunit CcoO; Belongs to the heme-copper respiratory oxidase family.
 
 
 0.999
ESU28311.1
ccoP protein.
 
 
 0.963
ESU28310.1
4Fe-4S ferredoxin.
 
  
 0.932
ESU28312.1
Cytochrome c oxidase, cbb3-type subunit IV.
 
 
 0.930
ESU28308.1
Hypothetical protein.
 
     0.894
ESU28314.1
Cytochrome cbb3 oxidase maturation protein CcoS.
 
  
 0.892
ESU28498.1
Hypothetical protein.
    
  0.861
ESU28315.1
Cytochrome cbb3 oxidase maturation protein CcoI.
 
   
 0.856
ESU28920.1
Cytochrome c family protein.
  
   0.832
ESU29214.1
Cytochrome c class I.
 
 
 0.751
Your Current Organism:
Flavobacterium limnosediminis
NCBI taxonomy Id: 1341181
Other names: F. limnosediminis JC2902, Flavobacterium limnosediminis JC2902, Flavobacterium sp. JC2902, Flavobacterium sp. R6S-5-11
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