STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Z947_2929HNH endonuclease family protein. (194 aa)    
Predicted Functional Partners:
Z947_181
TRAG family type IV secretion system protein VirD4.
   
 
 0.902
Z947_2201
Type IV secretory pathway VirD4 protein-like protein.
   
 
 0.902
Z947_2931
HhH-GPD.
       0.695
Z947_2930
Phospholipase/carboxylesterase family protein.
       0.686
Z947_2932
Precorrin-6A reductase.
       0.551
Z947_971
Modification methylase; Belongs to the N(4)/N(6)-methyltransferase family.
 
  
 0.540
Z947_2212
AAA ATPase superfamily.
     
 0.494
Z947_3745
YbjN domain containing protein.
  
    0.458
Z947_2933
Membrane protein.
       0.442
folD
Bifunctional protein FolD; Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10- methenyltetrahydrofolate to 10-formyltetrahydrofolate.
    
  0.416
Your Current Organism:
Sulfitobacter geojensis
NCBI taxonomy Id: 1342299
Other names: JCM 18835, KCTC 32124, S. geojensis, Sulfitobacter geojensis Kwak et al. 2014, Sulfitobacter sp. MM-124, strain MM-124
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