STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Z946_335Peptidase, M23/M37 family. (442 aa)    
Predicted Functional Partners:
Z946_334
Integral membrane protein CcmA involved in cell shape determination.
 
   
 0.891
Z946_3622
LysM domain protein/M23/M37 peptidase.
 
   
 0.690
Z946_1382
Penicillin-binding protein, 1A family.
  
     0.684
Z946_420
Penicillin-binding protein 1A.
  
   
 0.679
Z946_336
Hypothetical protein.
       0.546
Z946_1361
OmpA family domain protein.
  
  
  0.529
Z946_1160
Signal peptidase I.
 
  
 0.524
Z946_3018
Protein translocase subunit SecF.
 
     0.521
Z946_3017
Protein translocase subunit SecD.
 
     0.520
Z946_3474
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2, 6-diaminopimelate ligase.
 
  
 0.518
Your Current Organism:
Sulfitobacter noctilucicola
NCBI taxonomy Id: 1342301
Other names: JCM 18834, KCTC 32123, S. noctilucicola, Sulfitobacter noctilucicola Kwak et al. 2014, Sulfitobacter sp. NB-77, strain NB-77
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.