STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Z945_2948Putative 'Cold-shock' DNA-binding domain protein. (68 aa)    
Predicted Functional Partners:
Z945_1196
ATP-dependent helicase HrpB.
    
  0.780
Z945_948
Ribonuclease R.
    
 0.777
Z945_77
Polyribonucleotide nucleotidyltransferase.
    
 0.763
Z945_787
Ribonuclease PH.
     
 0.740
Z945_107
Exodeoxyribonuclease III.
   
  0.673
Z945_2281
Exodeoxyribonuclease III.
   
  0.673
Z945_472
ATP-dependent rna helicase, dead/deah box family.
   
 0.664
Z945_2202
Ribonuclease D.
    
  0.658
Z945_718
3'-5' exonuclease family protein.
    
  0.655
Z945_2251
Putative ATP-dependent RNA helicase.
   
 0.638
Your Current Organism:
Sulfitobacter noctilucae
NCBI taxonomy Id: 1342302
Other names: JCM 18833, KCTC 32122, S. noctilucae, Sulfitobacter noctilucae Kwak et al. 2014, Sulfitobacter sp. NB-68, strain NB-68
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