STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGP53351.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (476 aa)    
Predicted Functional Partners:
AGP57366.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
   
 0.919
AGP54132.1
NADH dehydrogenase subunit F; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
 0.882
AGP53350.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
 0.806
AGP56229.1
RNA helicase; Involved in the post-transcriptional processing of the daa operon mRNA, which encodes proteins involved in fimbrial biogenesis of an enteropathogenic E. coli strain; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
    
 0.799
AGP54307.1
Calcium-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
 0.798
AGP56416.1
Membrane protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
   
 0.797
AGP58663.1
Trypsin; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
 
 0.773
AGP54559.1
Serine protease; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
 
 0.742
AGP52760.1
Beta-ketoacyl synthase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
 0.726
AGP52762.1
Beta-ketoacyl synthase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
 0.726
Your Current Organism:
Streptomyces rapamycinicus
NCBI taxonomy Id: 1343740
Other names: S. rapamycinicus NRRL 5491, Streptomyces rapamycinicus NRRL 5491
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.