AGP59699.1 protein (Streptomyces rapamycinicus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Streptomyces rapamycinicus

NCBI taxonomy Id: 1343740
Other names: S. rapamycinicus NRRL 5491, Streptomyces rapamycinicus NRRL 5491

Export your current network:

... as a bitmap image:

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file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

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same PNG format, but at higher resolution

... as a vector graphic:

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AGP54190.1	AGP59699.1	M271_12980	M271_41610	Polyketide synthase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	DNA-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.575
AGP54190.1	AGP60799.1	M271_12980	M271_47180	Polyketide synthase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Integrin; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.444
AGP55340.1	AGP56871.1	M271_18950	M271_27005	DNA-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Regulator; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.768
AGP55340.1	AGP58128.1	M271_18950	M271_33570	DNA-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.543
AGP55340.1	AGP59699.1	M271_18950	M271_41610	DNA-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	DNA-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.614
AGP56139.1	AGP56295.1	M271_23125	M271_23990	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family.	Integrin; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.531
AGP56139.1	AGP59699.1	M271_23125	M271_41610	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family.	DNA-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.625
AGP56139.1	AGP60799.1	M271_23125	M271_47180	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family.	Integrin; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.617
AGP56199.1	AGP58128.1	M271_23445	M271_33570	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.481
AGP56199.1	AGP59699.1	M271_23445	M271_41610	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	DNA-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.545
AGP56295.1	AGP56139.1	M271_23990	M271_23125	Integrin; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family.	0.531
AGP56295.1	AGP56962.1	M271_23990	M271_27475	Integrin; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Glycosyltransferase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.409
AGP56295.1	AGP59699.1	M271_23990	M271_41610	Integrin; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	DNA-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.570
AGP56871.1	AGP55340.1	M271_27005	M271_18950	Regulator; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	DNA-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.768
AGP56871.1	AGP59699.1	M271_27005	M271_41610	Regulator; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	DNA-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.571
AGP56962.1	AGP56295.1	M271_27475	M271_23990	Glycosyltransferase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Integrin; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.409
AGP56962.1	AGP59699.1	M271_27475	M271_41610	Glycosyltransferase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	DNA-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.540
AGP56962.1	AGP60799.1	M271_27475	M271_47180	Glycosyltransferase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Integrin; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.626
AGP58128.1	AGP55340.1	M271_33570	M271_18950	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	DNA-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.543
AGP58128.1	AGP56199.1	M271_33570	M271_23445	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.481