AGP60325.1 protein (Streptomyces rapamycinicus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Streptomyces rapamycinicus

NCBI taxonomy Id: 1343740
Other names: S. rapamycinicus NRRL 5491, Streptomyces rapamycinicus NRRL 5491

Export your current network:

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file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

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same PNG format, but at higher resolution

... as a vector graphic:

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AGP52575.1	AGP52577.1	M271_04740	M271_04750	Phage baseplate protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Type IV secretion protein Rhs; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.992
AGP52575.1	AGP52578.1	M271_04740	M271_04755	Phage baseplate protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Peptidoglycan-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.990
AGP52575.1	AGP52674.1	M271_04740	M271_05235	Phage baseplate protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Phage tail protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.931
AGP52575.1	AGP52679.1	M271_04740	M271_05260	Phage baseplate protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Peptidase M23B; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.961
AGP52575.1	AGP52684.1	M271_04740	M271_05285	Phage baseplate protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Tail protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.988
AGP52575.1	AGP60325.1	M271_04740	M271_44785	Phage baseplate protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Tail protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.963
AGP52575.1	AGP60326.1	M271_04740	M271_44790	Phage baseplate protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Phage tail protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.758
AGP52575.1	AGP60334.1	M271_04740	M271_44830	Phage baseplate protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.929
AGP52575.1	AGP60337.1	M271_04740	M271_44845	Phage baseplate protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.772
AGP52577.1	AGP52575.1	M271_04750	M271_04740	Type IV secretion protein Rhs; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Phage baseplate protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.992
AGP52577.1	AGP52578.1	M271_04750	M271_04755	Type IV secretion protein Rhs; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Peptidoglycan-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.985
AGP52577.1	AGP52674.1	M271_04750	M271_05235	Type IV secretion protein Rhs; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Phage tail protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.893
AGP52577.1	AGP52679.1	M271_04750	M271_05260	Type IV secretion protein Rhs; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Peptidase M23B; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.939
AGP52577.1	AGP52682.1	M271_04750	M271_05275	Type IV secretion protein Rhs; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.968
AGP52577.1	AGP52684.1	M271_04750	M271_05285	Type IV secretion protein Rhs; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Tail protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.960
AGP52577.1	AGP60325.1	M271_04750	M271_44785	Type IV secretion protein Rhs; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Tail protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.962
AGP52577.1	AGP60326.1	M271_04750	M271_44790	Type IV secretion protein Rhs; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Phage tail protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.664
AGP52577.1	AGP60337.1	M271_04750	M271_44845	Type IV secretion protein Rhs; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.965
AGP52578.1	AGP52575.1	M271_04755	M271_04740	Peptidoglycan-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Phage baseplate protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.990
AGP52578.1	AGP52577.1	M271_04755	M271_04750	Peptidoglycan-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Type IV secretion protein Rhs; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.985