AGP60326.1 protein (Streptomyces rapamycinicus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Streptomyces rapamycinicus

NCBI taxonomy Id: 1343740
Other names: S. rapamycinicus NRRL 5491, Streptomyces rapamycinicus NRRL 5491

Export your current network:

... as a bitmap image:

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file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

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same PNG format, but at higher resolution

... as a vector graphic:

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AGP60325.1	AGP60326.1	M271_44785	M271_44790	Tail protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Phage tail protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.951
AGP60325.1	AGP60327.1	M271_44785	M271_44795	Tail protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.887
AGP60325.1	AGP60332.1	M271_44785	M271_44820	Tail protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Signal peptide protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.793
AGP60325.1	AGP60333.1	M271_44785	M271_44825	Tail protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.935
AGP60325.1	AGP60334.1	M271_44785	M271_44830	Tail protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.965
AGP60325.1	AGP60335.1	M271_44785	M271_44835	Tail protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Baseplate assembly protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.805
AGP60325.1	AGP60338.1	M271_44785	M271_44850	Tail protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.931
AGP60325.1	AGP60339.1	M271_44785	M271_44855	Tail protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.931
AGP60325.1	AGP60340.1	M271_44785	M271_44860	Tail protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.788
AGP60325.1	AGP60341.1	M271_44785	M271_44865	Tail protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.803
AGP60326.1	AGP60325.1	M271_44790	M271_44785	Phage tail protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Tail protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.951
AGP60326.1	AGP60327.1	M271_44790	M271_44795	Phage tail protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.938
AGP60326.1	AGP60332.1	M271_44790	M271_44820	Phage tail protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Signal peptide protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.889
AGP60326.1	AGP60333.1	M271_44790	M271_44825	Phage tail protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.889
AGP60326.1	AGP60334.1	M271_44790	M271_44830	Phage tail protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.889
AGP60326.1	AGP60335.1	M271_44790	M271_44835	Phage tail protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Baseplate assembly protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.889
AGP60326.1	AGP60338.1	M271_44790	M271_44850	Phage tail protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.889
AGP60326.1	AGP60339.1	M271_44790	M271_44855	Phage tail protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.889
AGP60326.1	AGP60340.1	M271_44790	M271_44860	Phage tail protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.889
AGP60326.1	AGP60341.1	M271_44790	M271_44865	Phage tail protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.871