STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIR75170.1Von Willebrand factor type A domain-containing protein. (565 aa)    
Predicted Functional Partners:
SIR75810.1
Magnesium chelatase subunit I; Manually curated.
  
 0.866
SIS10865.1
Magnesium chelatase subunit D.
  
 0.866
SIS19165.1
Extracellular solute-binding protein.
  
     0.683
SIR61711.1
Methyltransferase domain-containing protein.
  
 
  0.653
SIR75155.1
Polyketide cyclase / dehydrase and lipid transport.
    
  0.614
SIR61908.1
Protein of unknown function.
  
     0.580
SIR80070.1
Hypothetical protein.
  
  
  0.549
SIR89728.1
Cobaltochelatase CobN subunit.
  
 0.510
SIR75448.1
Hypothetical protein.
 
     0.493
SIR85926.1
Glycine cleavage system T protein (aminomethyltransferase); Belongs to the GcvT family.
   
 
  0.476
Your Current Organism:
Williamsia sterculiae
NCBI taxonomy Id: 1344003
Other names: CPCC 203464, DSM 45741, KCTC 29118, W. sterculiae, Williamsia sp. I12A-00824, Williamsia sp. I12A-01109, Williamsia sterculiae Fang et al. 2013, strain I12A-01109
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