STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIR98997.1Acyl-CoA dehydrogenase. (390 aa)    
Predicted Functional Partners:
SIR93519.1
Acyl-CoA dehydrogenase.
     0.977
SIR98987.1
Hypothetical protein.
     0.974
SIR60976.1
3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase.
  
 0.809
SIR98962.1
Ketoreductase RED1.
  
  0.785
SIR98951.1
3-hydroxybutyryl-CoA dehydrogenase.
  
  0.737
SIS07146.1
Electron transfer flavoprotein alpha subunit apoprotein.
   
   0.685
SIS07139.1
Electron transfer flavoprotein beta subunit.
   
   0.672
SIR98976.1
Hypothetical protein.
       0.629
SIR99018.1
Crotonobetainyl-CoA:carnitine CoA-transferase CaiB; Belongs to the CoA-transferase III family.
  
    0.623
SIS14490.1
fatty-acyl-CoA synthase.
  
 
 0.609
Your Current Organism:
Williamsia sterculiae
NCBI taxonomy Id: 1344003
Other names: CPCC 203464, DSM 45741, KCTC 29118, W. sterculiae, Williamsia sp. I12A-00824, Williamsia sp. I12A-01109, Williamsia sterculiae Fang et al. 2013, strain I12A-01109
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