STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIR99461.1Predicted arabinose efflux permease, MFS family. (429 aa)    
Predicted Functional Partners:
SIR99473.1
Putative transcriptional regulator; Belongs to the UPF0301 (AlgH) family.
       0.700
SIS12363.1
Hypothetical protein.
  
     0.645
SIS00008.1
DNA-binding transcriptional regulator, PadR family.
 
   
 0.630
SIS20651.1
Protein of unknown function.
  
     0.606
SIS19165.1
Extracellular solute-binding protein.
  
     0.572
SIR76192.1
Hypothetical protein.
  
     0.554
SIS19586.1
Copper transport outer membrane protein, MctB.
  
     0.541
SIR87091.1
KDO2-lipid IV(A) lauroyltransferase.
  
     0.533
SIS10960.1
Hypothetical protein.
  
     0.518
SIS16871.1
Hypothetical protein.
     
 0.515
Your Current Organism:
Williamsia sterculiae
NCBI taxonomy Id: 1344003
Other names: CPCC 203464, DSM 45741, KCTC 29118, W. sterculiae, Williamsia sp. I12A-00824, Williamsia sp. I12A-01109, Williamsia sterculiae Fang et al. 2013, strain I12A-01109
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.