STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIS09192.1Glutathione-independent formaldehyde dehydrogenase. (397 aa)    
Predicted Functional Partners:
SIR86357.1
PTS system D-fructose-specific IIA component (F1P-forming), Frc family /PTS system D-fructose-specific IIB component (F1P-forming), Frc family /PTS system D-fructose-specific IIC component (F1P-forming), Frc family.
  
 
  0.801
amiE
Amidase; Also exhibits in vitro acyl transferase activity, transferring the acyl moiety of short-chain amides to hydroxylamine to form hydroxamates.
   
  0.739
SIS20292.1
8-amino-7-oxononanoate synthase.
 
 
 0.648
SIR85926.1
Glycine cleavage system T protein (aminomethyltransferase); Belongs to the GcvT family.
  
 
 0.594
SIS04218.1
Phosphoglucomutase.
   
 0.594
SIR99642.1
Uncharacterized zinc-type alcohol dehydrogenase-like protein.
 
 
0.582
xylB
Xylulokinase.
  
 
 0.566
SIR76501.1
Threonine dehydrogenase.
  
  
 
0.557
SIR76487.1
Malate dehydrogenase (NAD); Catalyzes the reversible oxidation of malate to oxaloacetate.
   
 0.548
pgi
Glucose-6-phosphate isomerase; Belongs to the GPI family.
   
 0.534
Your Current Organism:
Williamsia sterculiae
NCBI taxonomy Id: 1344003
Other names: CPCC 203464, DSM 45741, KCTC 29118, W. sterculiae, Williamsia sp. I12A-00824, Williamsia sp. I12A-01109, Williamsia sterculiae Fang et al. 2013, strain I12A-01109
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