STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIS20643.1Phytoene dehydrogenase-related protein. (544 aa)    
Predicted Functional Partners:
SIS20647.1
Putative membrane protein.
 
  
 0.950
SIS20658.1
Glycosyl transferase family 2.
 
  
  0.919
SIS20685.1
Phytoene synthase.
 
 
 0.891
SIS20635.1
Ribosomal protein S18 acetylase RimI.
       0.840
SIS20651.1
Protein of unknown function.
       0.806
SIS20677.1
Phytoene desaturase.
 
   
 0.616
SIR88520.1
Lycopene beta-cyclase; Manually curated.
 
 
 0.576
SIS20628.1
Hypothetical protein.
 
     0.544
SIS10865.1
Magnesium chelatase subunit D.
 
 
 0.513
SIS20672.1
Geranylgeranyl diphosphate synthase, type I; Belongs to the FPP/GGPP synthase family.
  
 
 0.486
Your Current Organism:
Williamsia sterculiae
NCBI taxonomy Id: 1344003
Other names: CPCC 203464, DSM 45741, KCTC 29118, W. sterculiae, Williamsia sp. I12A-00824, Williamsia sp. I12A-01109, Williamsia sterculiae Fang et al. 2013, strain I12A-01109
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.