STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIS22118.1decaprenylphospho-beta-D-ribofuranose 2-oxidase. (471 aa)    
Predicted Functional Partners:
SIS22115.1
decaprenylphospho-beta-D-erythro-pentofuranosid- 2-ulose 2-reductase.
  
 0.992
SIS21182.1
Decaprenyl-phosphate phosphoribosyltransferase; Belongs to the UbiA prenyltransferase family.
 
  
 0.915
SIS22127.1
Putative flippase GtrA (transmembrane translocase of bactoprenol-linked glucose).
 
     0.837
SIR89622.1
Short-chain dehydrogenase.
  
    0.775
SIS20831.1
Ubiquinol-cytochrome c reductase cytochrome c subunit.
    
  0.768
SIS22112.1
Galactan 5-O-arabinofuranosyltransferase.
     
 0.711
SIS22714.1
FMN-dependent dehydrogenase, includes L-lactate dehydrogenase and type II isopentenyl diphosphate isomerase.
  
 0.636
SIS21187.1
5'-phosphoribosyl-monophospho-decaprenol phosphatase.
 
   
 0.629
SIS22108.1
Glyoxylase, beta-lactamase superfamily II.
    
  0.622
SIS20181.1
Glutamate synthase (NADH) large subunit.
    
 0.616
Your Current Organism:
Williamsia sterculiae
NCBI taxonomy Id: 1344003
Other names: CPCC 203464, DSM 45741, KCTC 29118, W. sterculiae, Williamsia sp. I12A-00824, Williamsia sp. I12A-01109, Williamsia sterculiae Fang et al. 2013, strain I12A-01109
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