STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A139A345DEAD-domain-containing protein; Belongs to the DEAD box helicase family. (591 aa)    
Predicted Functional Partners:
A0A139A748
PROCN-domain-containing protein.
   
 0.999
A0A139ALM2
Uncharacterized protein.
   
 0.999
A0A139AU81
P-loop containing nucleoside triphosphate hydrolase protein.
   
 0.999
A0A139A7I8
WD40 repeat-like protein.
    
 0.998
A0A139AN50
Spliceosomal protein DIB1; Essential role in pre-mRNA splicing. Also essential for entry into mitosis (G2/M progression) as well as for chromosome segregation during mitosis; Belongs to the DIM1 family.
    
 0.997
A0A139APA9
U5 small nuclear ribonucleo protein 200 kDa helicase-like protein.
   
 0.988
A0A139AEK7
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.984
A0A139AZW1
Small nuclear ribonucleoprotein Sm D2.
   
 0.982
A0A139A0C1
Uncharacterized protein.
   
 0.979
A0A139AK68
Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.
    
 0.979
Your Current Organism:
Gonapodya prolifera
NCBI taxonomy Id: 1344416
Other names: G. prolifera JEL478, Gonapodya prolifera JEL478
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