STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A139A3I4Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily. (385 aa)    
Predicted Functional Partners:
A0A139AJS9
HMG box domain-containing protein.
   
 0.991
A0A139AJD0
Retinoblastoma binding protein-like protein 4 variant.
   
 0.892
A0A139A894
WD40 repeat-like protein.
   
 0.867
A0A139A474
MRG-domain-containing protein.
    
 0.850
A0A139AY92
Uncharacterized protein.
   
 0.844
A0A139AIX8
HDAC_interact domain-containing protein.
   
 0.833
A0A139AJ12
Uncharacterized protein.
   
 0.833
A0A139ATW5
Uncharacterized protein.
    
 0.806
A0A139AEC5
Uncharacterized protein.
    
 0.803
A0A139AK23
Uncharacterized protein.
    
 0.793
Your Current Organism:
Gonapodya prolifera
NCBI taxonomy Id: 1344416
Other names: G. prolifera JEL478, Gonapodya prolifera JEL478
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.