A0A139AHN3 protein (Gonapodya prolifera) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A139AHN3

Uncharacterized protein. (882 aa)

Predicted Functional Partners:

A0A139ASN6

0.610

A0A138ZZK8

0.499

A0A139A365

0.436

A0A139AV91

0.420

Your Current Organism:

Gonapodya prolifera

NCBI taxonomy Id: 1344416
Other names: G. prolifera JEL478, Gonapodya prolifera JEL478

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A138ZZK8	A0A139AHN3	Protein YIP.	Uncharacterized protein.	0.499
A0A139A365	A0A139AHN3	Uncharacterized protein.	Uncharacterized protein.	0.436
A0A139AHN3	A0A138ZZK8	Uncharacterized protein.	Protein YIP.	0.499
A0A139AHN3	A0A139A365	Uncharacterized protein.	Uncharacterized protein.	0.436
A0A139AHN3	A0A139ASN6	Uncharacterized protein.	Glycosyltransferase family 24 protein.	0.610
A0A139AHN3	A0A139AV91	Uncharacterized protein.	P-loop containing nucleoside triphosphate hydrolase protein.	0.420
A0A139ASN6	A0A139AHN3	Glycosyltransferase family 24 protein.	Uncharacterized protein.	0.610
A0A139AV91	A0A139AHN3	P-loop containing nucleoside triphosphate hydrolase protein.	Uncharacterized protein.	0.420