STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A139AIX8HDAC_interact domain-containing protein. (1405 aa)    
Predicted Functional Partners:
A0A139AJD0
Retinoblastoma binding protein-like protein 4 variant.
   
 0.936
A0A139AE88
PHD domain-containing protein.
   
 
 0.897
A0A139A474
MRG-domain-containing protein.
   
 0.886
A0A139AK23
Uncharacterized protein.
    
 0.842
A0A139ATW5
Uncharacterized protein.
    
 0.842
A0A139A208
Arginase/deacetylase.
   
 0.833
A0A139A2M4
Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.
   
 0.833
A0A139A3I4
Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.
   
 0.833
A0A139AJ25
Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.
   
 0.833
A0A139AUL7
Hist_deacetyl domain-containing protein.
   
 0.833
Your Current Organism:
Gonapodya prolifera
NCBI taxonomy Id: 1344416
Other names: G. prolifera JEL478, Gonapodya prolifera JEL478
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.