A0A139ALA9 protein (Gonapodya prolifera) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A139ALA9

PB1 domain-containing protein. (308 aa)

Predicted Functional Partners:

A0A139AL75

0.850

A0A139A3S7

0.820

A0A139ASR4

0.769

A0A139A5F8

0.748

A0A139A2F1

0.745

A0A139ATY7

0.724

A0A139AJW4

0.692

A0A139AN40

0.684

A0A139ATP6

0.682

A0A139ATQ5

0.661

Your Current Organism:

Gonapodya prolifera

NCBI taxonomy Id: 1344416
Other names: G. prolifera JEL478, Gonapodya prolifera JEL478

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A139A2F1	A0A139A3S7	Uncharacterized protein.	Sec16_C domain-containing protein.	0.982
A0A139A2F1	A0A139A5F8	Uncharacterized protein.	WD40 repeat-like protein; Belongs to the WD repeat SEC13 family.	0.993
A0A139A2F1	A0A139AJW4	Uncharacterized protein.	Uncharacterized protein.	0.998
A0A139A2F1	A0A139AL75	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.990
A0A139A2F1	A0A139ALA9	Uncharacterized protein.	PB1 domain-containing protein.	0.745
A0A139A2F1	A0A139AN40	Uncharacterized protein.	ARF/SAR superfamily; Belongs to the small GTPase superfamily. SAR1 family.	0.981
A0A139A2F1	A0A139ATQ5	Uncharacterized protein.	Cornichon.	0.802
A0A139A2F1	A0A139ATY7	Uncharacterized protein.	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.	0.999
A0A139A3S7	A0A139A2F1	Sec16_C domain-containing protein.	Uncharacterized protein.	0.982
A0A139A3S7	A0A139A5F8	Sec16_C domain-containing protein.	WD40 repeat-like protein; Belongs to the WD repeat SEC13 family.	0.996
A0A139A3S7	A0A139AJW4	Sec16_C domain-containing protein.	Uncharacterized protein.	0.980
A0A139A3S7	A0A139AL75	Sec16_C domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.944
A0A139A3S7	A0A139ALA9	Sec16_C domain-containing protein.	PB1 domain-containing protein.	0.820
A0A139A3S7	A0A139AN40	Sec16_C domain-containing protein.	ARF/SAR superfamily; Belongs to the small GTPase superfamily. SAR1 family.	0.922
A0A139A3S7	A0A139ATQ5	Sec16_C domain-containing protein.	Cornichon.	0.723
A0A139A3S7	A0A139ATY7	Sec16_C domain-containing protein.	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.	0.984
A0A139A5F8	A0A139A2F1	WD40 repeat-like protein; Belongs to the WD repeat SEC13 family.	Uncharacterized protein.	0.993
A0A139A5F8	A0A139A3S7	WD40 repeat-like protein; Belongs to the WD repeat SEC13 family.	Sec16_C domain-containing protein.	0.996
A0A139A5F8	A0A139AJW4	WD40 repeat-like protein; Belongs to the WD repeat SEC13 family.	Uncharacterized protein.	0.990
A0A139A5F8	A0A139AL75	WD40 repeat-like protein; Belongs to the WD repeat SEC13 family.	WD_REPEATS_REGION domain-containing protein.	0.999