A0A139AME6 protein (Gonapodya prolifera) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A139AME6

t-SNARE coiled-coil homology domain-containing protein. (250 aa)

Predicted Functional Partners:

A0A139AWN3

0.972

A0A139AX55

0.969

A0A139A0M7

0.968

A0A139AFP2

0.968

A0A139AR18

0.953

A0A139AXW1

0.912

A0A139AM68

0.883

A0A139AQN4

0.883

A0A139AUF6

0.883

A0A139AZ99

0.874

Your Current Organism:

Gonapodya prolifera

NCBI taxonomy Id: 1344416
Other names: G. prolifera JEL478, Gonapodya prolifera JEL478

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A139A0M7	A0A139AM68	V-snare-domain-containing protein.	Uncharacterized protein.	0.756
A0A139A0M7	A0A139AME6	V-snare-domain-containing protein.	t-SNARE coiled-coil homology domain-containing protein.	0.968
A0A139A0M7	A0A139AQN4	V-snare-domain-containing protein.	Synaptobrevin.	0.926
A0A139A0M7	A0A139AR18	V-snare-domain-containing protein.	Alpha-soluble NSF attachment protein.	0.959
A0A139A0M7	A0A139AUF6	V-snare-domain-containing protein.	Synaptobrevin.	0.926
A0A139A0M7	A0A139AWN3	V-snare-domain-containing protein.	t-SNARE; Belongs to the syntaxin family.	0.969
A0A139A0M7	A0A139AX55	V-snare-domain-containing protein.	Snare-like protein; Belongs to the synaptobrevin family.	0.969
A0A139A0M7	A0A139AXW1	V-snare-domain-containing protein.	t-SNARE.	0.903
A0A139A0M7	A0A139AZ99	V-snare-domain-containing protein.	TPR-like protein.	0.801
A0A139AFP2	A0A139AM68	Putative vesicle transport V-snare protein vti1a.	Uncharacterized protein.	0.756
A0A139AFP2	A0A139AME6	Putative vesicle transport V-snare protein vti1a.	t-SNARE coiled-coil homology domain-containing protein.	0.968
A0A139AFP2	A0A139AQN4	Putative vesicle transport V-snare protein vti1a.	Synaptobrevin.	0.926
A0A139AFP2	A0A139AR18	Putative vesicle transport V-snare protein vti1a.	Alpha-soluble NSF attachment protein.	0.959
A0A139AFP2	A0A139AUF6	Putative vesicle transport V-snare protein vti1a.	Synaptobrevin.	0.926
A0A139AFP2	A0A139AWN3	Putative vesicle transport V-snare protein vti1a.	t-SNARE; Belongs to the syntaxin family.	0.969
A0A139AFP2	A0A139AX55	Putative vesicle transport V-snare protein vti1a.	Snare-like protein; Belongs to the synaptobrevin family.	0.969
A0A139AFP2	A0A139AXW1	Putative vesicle transport V-snare protein vti1a.	t-SNARE.	0.903
A0A139AFP2	A0A139AZ99	Putative vesicle transport V-snare protein vti1a.	TPR-like protein.	0.801
A0A139AM68	A0A139A0M7	Uncharacterized protein.	V-snare-domain-containing protein.	0.756
A0A139AM68	A0A139AFP2	Uncharacterized protein.	Putative vesicle transport V-snare protein vti1a.	0.756