STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A139AU18DEAD-domain-containing protein. (855 aa)    
Predicted Functional Partners:
NOP7
Pescadillo homolog; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.
   
 0.889
A0A139AI98
Eukaryotic rRNA processing.
   
 0.845
A0A139AMJ7
P-loop containing nucleoside triphosphate hydrolase protein.
  
 0.841
A0A139A3E8
Antiviral helicase.
   
 0.823
A0A139AXR0
P-loop containing nucleoside triphosphate hydrolase protein; Belongs to the DEAD box helicase family.
  
0.805
A0A139AFD8
ARM repeat-containing protein.
   
 0.801
A0A139AAC3
Uncharacterized protein.
   
 0.800
A0A138ZXX3
Utp12 domain-containing protein.
   
  0.797
A0A139AEA0
eIF4AIII; Belongs to the DEAD box helicase family.
  
0.792
A0A139AR20
S-adenosyl-L-methionine-dependent methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. Protein arginine N-methyltransferase family.
   
  0.780
Your Current Organism:
Gonapodya prolifera
NCBI taxonomy Id: 1344416
Other names: G. prolifera JEL478, Gonapodya prolifera JEL478
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