STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A139AW21Nudix hydrolase domain-containing protein. (315 aa)    
Predicted Functional Partners:
A0A139A2F6
YjeF-related protein.
  
 0.781
A0A139A8N5
Pyridoxamine 5'-phosphate oxidase.
  
 0.781
A0A139ADK4
PAT1 domain-containing protein.
    
 0.764
A0A139ATB2
Nudix hydrolase domain-containing protein.
  
  
  0.736
A0A139AWG9
Nucleoside diphosphate kinase; Belongs to the NDK family.
  
 
 0.697
A0A139AXT2
Uncharacterized protein.
    
 0.691
LSM4
U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.
    
 0.677
LSM1
U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.
    
 0.676
A0A139API9
Nudix hydrolase domain-containing protein.
   
 0.675
A0A139AV69
Uncharacterized protein.
   
 0.675
Your Current Organism:
Gonapodya prolifera
NCBI taxonomy Id: 1344416
Other names: G. prolifera JEL478, Gonapodya prolifera JEL478
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.