STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A139AW62P68 RNA helicase; Belongs to the DEAD box helicase family. (559 aa)    
Predicted Functional Partners:
A0A139AMJ7
P-loop containing nucleoside triphosphate hydrolase protein.
  
 0.912
NOP7
Pescadillo homolog; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.
   
 0.911
A0A138ZXX3
Utp12 domain-containing protein.
   
  0.878
A0A139AI73
Nop domain-containing protein.
  
 
 0.872
ERB1
Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.
   
 0.871
A0A139A5B8
WD40 repeat-like protein.
   
 0.859
A0A139AZR0
Fibrillarin.
   
 
 0.851
A0A139A3E8
Antiviral helicase.
   
 0.850
A0A139AMF5
RNA helicase.
  
 
0.850
A0A139AI98
Eukaryotic rRNA processing.
   
 0.845
Your Current Organism:
Gonapodya prolifera
NCBI taxonomy Id: 1344416
Other names: G. prolifera JEL478, Gonapodya prolifera JEL478
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.