A0A1D2V839 protein (Ascoidea rubescens) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A1D2V839

PFK domain-containing protein. (115 aa)

Predicted Functional Partners:

A0A1D2VPR3

0.976

A0A1D2VIK5

0.912

A0A1D2VQV5

0.833

A0A1D2VPW7

0.774

A0A1D2VD79

0.770

A0A1D2VNI7

0.770

A0A1D2VM71

0.763

A0A1D2VMQ3

0.737

A0A1D2VNX0

0.737

A0A1D2VKH0

0.731

Your Current Organism:

Ascoidea rubescens

NCBI taxonomy Id: 1344418
Other names: A. rubescens DSM 1968, Ascoidea rubescens DSM 1968

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1D2V839	A0A1D2VD79	PFK domain-containing protein.	Pyruvate kinase; Belongs to the pyruvate kinase family.	0.770
A0A1D2V839	A0A1D2VIK5	PFK domain-containing protein.	Glucose-6-phosphate isomerase; Belongs to the GPI family.	0.912
A0A1D2V839	A0A1D2VKH0	PFK domain-containing protein.	TPR_REGION domain-containing protein.	0.731
A0A1D2V839	A0A1D2VM71	PFK domain-containing protein.	Glycoside hydrolase family 15 protein.	0.763
A0A1D2V839	A0A1D2VMQ3	PFK domain-containing protein.	annotation not available	0.737
A0A1D2V839	A0A1D2VNI7	PFK domain-containing protein.	Pyruvate kinase; Belongs to the pyruvate kinase family.	0.770
A0A1D2V839	A0A1D2VNX0	PFK domain-containing protein.	annotation not available	0.737
A0A1D2V839	A0A1D2VPR3	PFK domain-containing protein.	ATP-dependent 6-phosphofructokinase; Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis; Belongs to the phosphofructokinase type A (PFKA) family. ATP-dependent PFK group I subfamily. Eukaryotic two domain clade 'E' sub-subfamily.	0.976
A0A1D2V839	A0A1D2VPW7	PFK domain-containing protein.	Phosphoglycerate kinase; Belongs to the phosphoglycerate kinase family.	0.774
A0A1D2V839	A0A1D2VQV5	PFK domain-containing protein.	Triosephosphate isomerase.	0.833
A0A1D2VD79	A0A1D2V839	Pyruvate kinase; Belongs to the pyruvate kinase family.	PFK domain-containing protein.	0.770
A0A1D2VD79	A0A1D2VIK5	Pyruvate kinase; Belongs to the pyruvate kinase family.	Glucose-6-phosphate isomerase; Belongs to the GPI family.	0.939
A0A1D2VD79	A0A1D2VKH0	Pyruvate kinase; Belongs to the pyruvate kinase family.	TPR_REGION domain-containing protein.	0.848
A0A1D2VD79	A0A1D2VMQ3	Pyruvate kinase; Belongs to the pyruvate kinase family.	annotation not available	0.864
A0A1D2VD79	A0A1D2VNX0	Pyruvate kinase; Belongs to the pyruvate kinase family.	annotation not available	0.864
A0A1D2VD79	A0A1D2VPR3	Pyruvate kinase; Belongs to the pyruvate kinase family.	ATP-dependent 6-phosphofructokinase; Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis; Belongs to the phosphofructokinase type A (PFKA) family. ATP-dependent PFK group I subfamily. Eukaryotic two domain clade 'E' sub-subfamily.	0.812
A0A1D2VD79	A0A1D2VPW7	Pyruvate kinase; Belongs to the pyruvate kinase family.	Phosphoglycerate kinase; Belongs to the phosphoglycerate kinase family.	0.915
A0A1D2VD79	A0A1D2VQV5	Pyruvate kinase; Belongs to the pyruvate kinase family.	Triosephosphate isomerase.	0.837
A0A1D2VIK5	A0A1D2V839	Glucose-6-phosphate isomerase; Belongs to the GPI family.	PFK domain-containing protein.	0.912
A0A1D2VIK5	A0A1D2VD79	Glucose-6-phosphate isomerase; Belongs to the GPI family.	Pyruvate kinase; Belongs to the pyruvate kinase family.	0.939