STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A1D2VAZ9Clavaminate synthase-like protein. (523 aa)    
Predicted Functional Partners:
A0A1D2V8R7
Histone H3; Belongs to the histone H3 family.
    
 0.894
A0A1D2VLQ3
Histone H3; Belongs to the histone H3 family.
    
 0.894
A0A1D2VNV3
Histone-fold-containing protein.
    
 0.894
A0A1D2VAW0
Scskp1-Sccdc4-Cpd peptide complex; Belongs to the SKP1 family.
    
 0.825
A0A1D2VH30
E3 ubiquitin ligase SCF complex, Skp subunit; Belongs to the SKP1 family.
    
 0.825
A0A1D2VNQ4
E3 ubiquitin ligase SCF complex, Skp subunit; Belongs to the SKP1 family.
    
 0.825
A0A1D2VSC7
Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.
    
 0.791
A0A1D2V881
Putative an1-type zinc finger protein.
    
 0.759
A0A1D2VGP2
Ubiquitin.
    
 0.759
A0A1D2VEC8
Neural cell expressed, developmentally down-regulated 8.
    
  0.742
Your Current Organism:
Ascoidea rubescens
NCBI taxonomy Id: 1344418
Other names: A. rubescens DSM 1968, Ascoidea rubescens DSM 1968
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.