STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A1D2VN17Uncharacterized protein. (557 aa)    
Predicted Functional Partners:
A0A1D2VBM0
WD40 repeat-like protein.
   
 0.999
A0A1D2VKI0
CDC73-domain-containing protein.
   
 0.999
A0A1D2VKS0
Leo1-domain-containing protein.
   
 0.999
A0A1D2VJI4
Plus3 domain-containing protein.
   
 0.995
A0A1D2VAK7
TPR-like protein.
   
 0.994
A0A1D2VPM7
FACT complex subunit POB3; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment of [...]
   
 0.991
A0A1D2VFZ3
Global regulator of transcription.
    
 0.986
A0A1D2VFC2
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
  0.974
A0A1D2VCM1
DNA-directed RNA polymerase II 45 kDa polypeptide.
   
 0.962
A0A1D2V8P2
Transcription elongation factor Spt5.
   
 0.959
Your Current Organism:
Ascoidea rubescens
NCBI taxonomy Id: 1344418
Other names: A. rubescens DSM 1968, Ascoidea rubescens DSM 1968
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