Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
F989_00475 | F989_00476 | GCA_001485085_00396 | GCA_001485085_00397 | Unannotated protein; Belongs to the peptidase S26 family. | Unannotated protein. | 0.812 |
F989_00475 | F989_00479 | GCA_001485085_00396 | GCA_001485085_00400 | Unannotated protein; Belongs to the peptidase S26 family. | Unannotated protein. | 0.793 |
F989_00475 | F989_00480 | GCA_001485085_00396 | GCA_001485085_00401 | Unannotated protein; Belongs to the peptidase S26 family. | Unannotated protein; Involved in DNA repair and RecF pathway recombination. | 0.789 |
F989_00475 | era | GCA_001485085_00396 | GCA_001485085_00399 | Unannotated protein; Belongs to the peptidase S26 family. | Unannotated protein; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | 0.838 |
F989_00475 | lepA | GCA_001485085_00396 | GCA_001485085_00395 | Unannotated protein; Belongs to the peptidase S26 family. | Unannotated protein; Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back-translocation proceeds from a post-translocation (POST) complex to a pre- translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP- dependent manner. | 0.935 |
F989_00475 | pdxJ | GCA_001485085_00396 | GCA_001485085_00402 | Unannotated protein; Belongs to the peptidase S26 family. | Unannotated protein; Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino- 2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate. | 0.714 |
F989_00475 | rnc | GCA_001485085_00396 | GCA_001485085_00398 | Unannotated protein; Belongs to the peptidase S26 family. | Unannotated protein; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism. | 0.870 |
F989_00476 | F989_00475 | GCA_001485085_00397 | GCA_001485085_00396 | Unannotated protein. | Unannotated protein; Belongs to the peptidase S26 family. | 0.812 |
F989_00476 | F989_00479 | GCA_001485085_00397 | GCA_001485085_00400 | Unannotated protein. | Unannotated protein. | 0.843 |
F989_00476 | F989_00480 | GCA_001485085_00397 | GCA_001485085_00401 | Unannotated protein. | Unannotated protein; Involved in DNA repair and RecF pathway recombination. | 0.865 |
F989_00476 | era | GCA_001485085_00397 | GCA_001485085_00399 | Unannotated protein. | Unannotated protein; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | 0.877 |
F989_00476 | ftsQ | GCA_001485085_00397 | GCA_001485085_00788 | Unannotated protein. | Unannotated protein; Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly. | 0.437 |
F989_00476 | lepA | GCA_001485085_00397 | GCA_001485085_00395 | Unannotated protein. | Unannotated protein; Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back-translocation proceeds from a post-translocation (POST) complex to a pre- translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP- dependent manner. | 0.778 |
F989_00476 | pdxJ | GCA_001485085_00397 | GCA_001485085_00402 | Unannotated protein. | Unannotated protein; Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino- 2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate. | 0.749 |
F989_00476 | rnc | GCA_001485085_00397 | GCA_001485085_00398 | Unannotated protein. | Unannotated protein; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism. | 0.892 |
F989_00479 | F989_00475 | GCA_001485085_00400 | GCA_001485085_00396 | Unannotated protein. | Unannotated protein; Belongs to the peptidase S26 family. | 0.793 |
F989_00479 | F989_00476 | GCA_001485085_00400 | GCA_001485085_00397 | Unannotated protein. | Unannotated protein. | 0.843 |
F989_00479 | F989_00480 | GCA_001485085_00400 | GCA_001485085_00401 | Unannotated protein. | Unannotated protein; Involved in DNA repair and RecF pathway recombination. | 0.857 |
F989_00479 | era | GCA_001485085_00400 | GCA_001485085_00399 | Unannotated protein. | Unannotated protein; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | 0.843 |
F989_00479 | lepA | GCA_001485085_00400 | GCA_001485085_00395 | Unannotated protein. | Unannotated protein; Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back-translocation proceeds from a post-translocation (POST) complex to a pre- translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP- dependent manner. | 0.763 |
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