STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OI25_10654Fe-4S dicluster domain protein; [C] COG0247 Fe-S oxidoreductase. (1364 aa)    
Predicted Functional Partners:
OI25_1064
Histidine triad (HIT) protein; [FGR] COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases.
 
 
   0.777
OI25_527
Hypothetical protein.
  
     0.693
OI25_2846
4Fe-4S dicluster domain protein; [C] COG1139 Uncharacterized conserved protein containing a ferredoxin-like domain.
  
 
 0.665
OI25_6935
4Fe-4S dicluster domain protein; [C] COG1139 Uncharacterized conserved protein containing a ferredoxin-like domain.
  
 
 0.665
OI25_1063
Conserved hypothetical protein; [S] COG3536 Uncharacterized protein conserved in bacteria.
 
     0.610
ccsB
cytochr_II_ccsB: cytochrome c-type biogenesis protein CcsB; [O] COG0755 ABC-type transport system involved in cytochrome c biogenesis, permease component.
 
  
 0.605
OI25_2218
Conserved hypothetical protein; [KR] COG0454 Histone acetyltransferase HPA2 and related acetyltransferases.
  
     0.600
OI25_419
Hypothetical protein.
  
     0.597
lldD
Nitronate monooxygenase family protein; [C] COG1304 L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases.
  
 0.592
mdlB
[C] COG1304 L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases.
  
 0.592
Your Current Organism:
Paraburkholderia fungorum
NCBI taxonomy Id: 134537
Other names: ATCC BAA-463, Burkholderia fungorum, Burkholderia fungorum Coenye et al. 2001, Burkholderia sp. LMG 16225, Burkholderia sp. LMG 16307, Burkholderia sp. LMG16225, Burkholderia sp. LMG16307, CCUG 31961, CIP 107096, DSM 17061, JCM 21562, LMG 16225, LMG:16225, NBRC 102489, P. fungorum, Paraburkholderia fungorum (Coenye et al. 2001) Sawana et al. 2015, strain Croize P763-2
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