Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
OI25_1693 | OI25_1694 | OI25_1693 | OI25_1694 | Short chain dehydrogenase family protein; [IQR] COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases). | folB_dom: FolB domain protein; [H] COG1539 Dihydroneopterin aldolase. | 0.790 |
OI25_1693 | ttcA | OI25_1693 | OI25_1695 | Short chain dehydrogenase family protein; [IQR] COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases). | PP-loop family protein; Catalyzes the ATP-dependent 2-thiolation of cytidine in position 32 of tRNA, to form 2-thiocytidine (s(2)C32). The sulfur atoms are provided by the cysteine/cysteine desulfurase (IscS) system. | 0.578 |
OI25_1694 | OI25_1693 | OI25_1694 | OI25_1693 | folB_dom: FolB domain protein; [H] COG1539 Dihydroneopterin aldolase. | Short chain dehydrogenase family protein; [IQR] COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases). | 0.790 |
OI25_1694 | OI25_1842 | OI25_1694 | OI25_1842 | folB_dom: FolB domain protein; [H] COG1539 Dihydroneopterin aldolase. | STAS domain protein; [R] COG3113 Predicted NTP binding protein (contains STAS domain). | 0.676 |
OI25_1694 | OI25_2125 | OI25_1694 | OI25_2125 | folB_dom: FolB domain protein; [H] COG1539 Dihydroneopterin aldolase. | Hypothetical protein. | 0.663 |
OI25_1694 | OI25_5317 | OI25_1694 | OI25_5317 | folB_dom: FolB domain protein; [H] COG1539 Dihydroneopterin aldolase. | Hypothetical protein. | 0.686 |
OI25_1694 | OI25_5796 | OI25_1694 | OI25_5796 | folB_dom: FolB domain protein; [H] COG1539 Dihydroneopterin aldolase. | [H] COG0302 GTP cyclohydrolase I. | 0.842 |
OI25_1694 | folC | OI25_1694 | OI25_5294 | folB_dom: FolB domain protein; [H] COG1539 Dihydroneopterin aldolase. | folC: bifunctional FolC family protein; [H] COG0285 Folylpolyglutamate synthase; Belongs to the folylpolyglutamate synthase family. | 0.714 |
OI25_1694 | folE | OI25_1694 | OI25_6333 | folB_dom: FolB domain protein; [H] COG1539 Dihydroneopterin aldolase. | folE: GTP cyclohydrolase I; [H] COG0302 GTP cyclohydrolase I. | 0.842 |
OI25_1694 | folK | OI25_1694 | OI25_956 | folB_dom: FolB domain protein; [H] COG1539 Dihydroneopterin aldolase. | folK: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase; [H] COG0801 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase. | 0.991 |
OI25_1694 | folP | OI25_1694 | OI25_2565 | folB_dom: FolB domain protein; [H] COG1539 Dihydroneopterin aldolase. | DHPS: dihydropteroate synthase; [H] COG0294 Dihydropteroate synthase and related enzymes. | 0.991 |
OI25_1694 | ttcA | OI25_1694 | OI25_1695 | folB_dom: FolB domain protein; [H] COG1539 Dihydroneopterin aldolase. | PP-loop family protein; Catalyzes the ATP-dependent 2-thiolation of cytidine in position 32 of tRNA, to form 2-thiocytidine (s(2)C32). The sulfur atoms are provided by the cysteine/cysteine desulfurase (IscS) system. | 0.820 |
OI25_1842 | OI25_1694 | OI25_1842 | OI25_1694 | STAS domain protein; [R] COG3113 Predicted NTP binding protein (contains STAS domain). | folB_dom: FolB domain protein; [H] COG1539 Dihydroneopterin aldolase. | 0.676 |
OI25_1842 | OI25_5317 | OI25_1842 | OI25_5317 | STAS domain protein; [R] COG3113 Predicted NTP binding protein (contains STAS domain). | Hypothetical protein. | 0.772 |
OI25_2125 | OI25_1694 | OI25_2125 | OI25_1694 | Hypothetical protein. | folB_dom: FolB domain protein; [H] COG1539 Dihydroneopterin aldolase. | 0.663 |
OI25_5317 | OI25_1694 | OI25_5317 | OI25_1694 | Hypothetical protein. | folB_dom: FolB domain protein; [H] COG1539 Dihydroneopterin aldolase. | 0.686 |
OI25_5317 | OI25_1842 | OI25_5317 | OI25_1842 | Hypothetical protein. | STAS domain protein; [R] COG3113 Predicted NTP binding protein (contains STAS domain). | 0.772 |
OI25_5796 | OI25_1694 | OI25_5796 | OI25_1694 | [H] COG0302 GTP cyclohydrolase I. | folB_dom: FolB domain protein; [H] COG1539 Dihydroneopterin aldolase. | 0.842 |
OI25_5796 | folC | OI25_5796 | OI25_5294 | [H] COG0302 GTP cyclohydrolase I. | folC: bifunctional FolC family protein; [H] COG0285 Folylpolyglutamate synthase; Belongs to the folylpolyglutamate synthase family. | 0.615 |
OI25_5796 | folE | OI25_5796 | OI25_6333 | [H] COG0302 GTP cyclohydrolase I. | folE: GTP cyclohydrolase I; [H] COG0302 GTP cyclohydrolase I. | 0.918 |
page 1 of 3