STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OI25_1954Hypothetical protein. (161 aa)    
Predicted Functional Partners:
OI25_5317
Hypothetical protein.
  
     0.764
OI25_2863
Conserved hypothetical protein; [S] COG4255 Uncharacterized protein conserved in bacteria.
  
     0.757
OI25_6315
Hypothetical protein; OMP85_target: outer membrane insertion C-terminal signal domain protein; [M] COG3203 Outer membrane protein (porin).
  
     0.751
OI25_2345
Hypothetical protein; OMP85_target: outer membrane insertion C-terminal signal domain protein; [M] COG3203 Outer membrane protein (porin).
  
     0.745
OI25_5096
[M] COG3203 Outer membrane protein (porin).
  
     0.743
OI25_5230
[M] COG3203 Outer membrane protein (porin).
  
     0.741
OI25_2130
Conserved hypothetical protein; [M] COG3307 Lipid A core - O-antigen ligase and related enzymes.
 
     0.740
OI25_3367
Putative membrane protein; [M] COG1807 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family.
  
     0.738
OI25_6101
[M] COG3203 Outer membrane protein (porin).
  
     0.738
OI25_6519
[M] COG3203 Outer membrane protein (porin).
  
     0.737
Your Current Organism:
Paraburkholderia fungorum
NCBI taxonomy Id: 134537
Other names: ATCC BAA-463, Burkholderia fungorum, Burkholderia fungorum Coenye et al. 2001, Burkholderia sp. LMG 16225, Burkholderia sp. LMG 16307, Burkholderia sp. LMG16225, Burkholderia sp. LMG16307, CCUG 31961, CIP 107096, DSM 17061, JCM 21562, LMG 16225, LMG:16225, NBRC 102489, P. fungorum, Paraburkholderia fungorum (Coenye et al. 2001) Sawana et al. 2015, strain Croize P763-2
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