Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
OI25_2449 | OI25_2451 | OI25_2449 | OI25_2451 | Hypothetical protein. | Peptidase M48 family protein; [O] COG0501 Zn-dependent protease with chaperone function. | 0.713 |
OI25_2449 | OI25_3791 | OI25_2449 | OI25_3791 | Hypothetical protein. | Putative membrane protein. | 0.435 |
OI25_2449 | OI25_453 | OI25_2449 | OI25_453 | Hypothetical protein. | RDD family protein; [S] COG1714 Predicted membrane protein/domain. | 0.418 |
OI25_2449 | OI25_4991 | OI25_2449 | OI25_4991 | Hypothetical protein. | HEQRo_perm_3TM: amino ABC transporter, permease, 3-TM region, His/Glu/Gln/Arg/opine family domain protein; [E] COG1126 ABC-type polar amino acid transport system, ATPase component. | 0.453 |
OI25_2449 | gspL | OI25_2449 | OI25_1496 | Hypothetical protein. | typeII_sec_gspL: type II secretion system protein L; [U] COG3297 Type II secretory pathway, component PulL. | 0.451 |
OI25_2449 | orn | OI25_2449 | OI25_2452 | Hypothetical protein. | Exonuclease family protein; 3'-to-5' exoribonuclease specific for small oligoribonucleotides; Belongs to the oligoribonuclease family. | 0.486 |
OI25_2449 | rsgA | OI25_2449 | OI25_2450 | Hypothetical protein. | Ribosome small subunit-dependent GTPase A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit; Belongs to the TRAFAC class YlqF/YawG GTPase family. RsgA subfamily. | 0.712 |
OI25_2451 | OI25_2449 | OI25_2451 | OI25_2449 | Peptidase M48 family protein; [O] COG0501 Zn-dependent protease with chaperone function. | Hypothetical protein. | 0.713 |
OI25_2451 | orn | OI25_2451 | OI25_2452 | Peptidase M48 family protein; [O] COG0501 Zn-dependent protease with chaperone function. | Exonuclease family protein; 3'-to-5' exoribonuclease specific for small oligoribonucleotides; Belongs to the oligoribonuclease family. | 0.591 |
OI25_2451 | rsgA | OI25_2451 | OI25_2450 | Peptidase M48 family protein; [O] COG0501 Zn-dependent protease with chaperone function. | Ribosome small subunit-dependent GTPase A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit; Belongs to the TRAFAC class YlqF/YawG GTPase family. RsgA subfamily. | 0.807 |
OI25_3791 | OI25_2449 | OI25_3791 | OI25_2449 | Putative membrane protein. | Hypothetical protein. | 0.435 |
OI25_3791 | gspL | OI25_3791 | OI25_1496 | Putative membrane protein. | typeII_sec_gspL: type II secretion system protein L; [U] COG3297 Type II secretory pathway, component PulL. | 0.691 |
OI25_453 | OI25_2449 | OI25_453 | OI25_2449 | RDD family protein; [S] COG1714 Predicted membrane protein/domain. | Hypothetical protein. | 0.418 |
OI25_4991 | OI25_2449 | OI25_4991 | OI25_2449 | HEQRo_perm_3TM: amino ABC transporter, permease, 3-TM region, His/Glu/Gln/Arg/opine family domain protein; [E] COG1126 ABC-type polar amino acid transport system, ATPase component. | Hypothetical protein. | 0.453 |
gspL | OI25_2449 | OI25_1496 | OI25_2449 | typeII_sec_gspL: type II secretion system protein L; [U] COG3297 Type II secretory pathway, component PulL. | Hypothetical protein. | 0.451 |
gspL | OI25_3791 | OI25_1496 | OI25_3791 | typeII_sec_gspL: type II secretion system protein L; [U] COG3297 Type II secretory pathway, component PulL. | Putative membrane protein. | 0.691 |
orn | OI25_2449 | OI25_2452 | OI25_2449 | Exonuclease family protein; 3'-to-5' exoribonuclease specific for small oligoribonucleotides; Belongs to the oligoribonuclease family. | Hypothetical protein. | 0.486 |
orn | OI25_2451 | OI25_2452 | OI25_2451 | Exonuclease family protein; 3'-to-5' exoribonuclease specific for small oligoribonucleotides; Belongs to the oligoribonuclease family. | Peptidase M48 family protein; [O] COG0501 Zn-dependent protease with chaperone function. | 0.591 |
orn | rsgA | OI25_2452 | OI25_2450 | Exonuclease family protein; 3'-to-5' exoribonuclease specific for small oligoribonucleotides; Belongs to the oligoribonuclease family. | Ribosome small subunit-dependent GTPase A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit; Belongs to the TRAFAC class YlqF/YawG GTPase family. RsgA subfamily. | 0.690 |
rsgA | OI25_2449 | OI25_2450 | OI25_2449 | Ribosome small subunit-dependent GTPase A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit; Belongs to the TRAFAC class YlqF/YawG GTPase family. RsgA subfamily. | Hypothetical protein. | 0.712 |
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