STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OI25_2646Glycosyltransferase 9 family protein; [R] COG0457 FOG: TPR repeat. (491 aa)    
Predicted Functional Partners:
aroC
Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system.
       0.686
waaC-2
heptsyl_trn_I: lipopolysaccharide heptosyltransferase I; [M] COG0859 ADP-heptose:LPS heptosyltransferase.
 
  
  0.565
OI25_6685
Tetratricopeptide repeat family protein; [R] COG0457 FOG: TPR repeat.
 
 
0.563
spy
[O] COG3914 Predicted O-linked N-acetylglucosamine transferase, SPINDLY family.
 
   
 0.544
OI25_827
Glycosyl transferases group 1 family protein; [M] COG0438 Glycosyltransferase.
 
 
 0.541
OI25_1124
4Fe-4S dicluster domain protein; [C] COG1145 Ferredoxin.
  
   0.526
nuoI
NADH-quinone oxidoreductase, chain I family protein; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.
  
   0.526
waaC
heptsyl_trn_I: lipopolysaccharide heptosyltransferase I; [M] COG0859 ADP-heptose:LPS heptosyltransferase.
    
  0.506
OI25_1052
Tetratricopeptide repeat family protein; [R] COG0457 FOG: TPR repeat.
 
 
0.500
OI25_2394
Glycosyltransferase 9 family protein; [R] COG0457 FOG: TPR repeat.
 
 
0.498
Your Current Organism:
Paraburkholderia fungorum
NCBI taxonomy Id: 134537
Other names: ATCC BAA-463, Burkholderia fungorum, Burkholderia fungorum Coenye et al. 2001, Burkholderia sp. LMG 16225, Burkholderia sp. LMG 16307, Burkholderia sp. LMG16225, Burkholderia sp. LMG16307, CCUG 31961, CIP 107096, DSM 17061, JCM 21562, LMG 16225, LMG:16225, NBRC 102489, P. fungorum, Paraburkholderia fungorum (Coenye et al. 2001) Sawana et al. 2015, strain Croize P763-2
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