STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OI25_2652pcaJ_scoB_fam: 3-oxoacid CoA-transferase, B subunit; [I] COG2057 Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit. (213 aa)    
Predicted Functional Partners:
OI25_2651
pcaI_scoA_fam: 3-oxoacid CoA-transferase, A subunit; [I] COG1788 Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit.
 0.999
OI25_6335
pcaI_scoA_fam: 3-oxoacid CoA-transferase, A subunit; [I] COG1788 Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit.
 
 0.997
OI25_1049
enoyl-CoA hydratase/isomerase family protein; [I] COG1024 Enoyl-CoA hydratase/carnithine racemase.
  
 0.939
OI25_2696
enoyl-CoA hydratase/isomerase family protein; [I] COG1250 3-hydroxyacyl-CoA dehydrogenase; Belongs to the enoyl-CoA hydratase/isomerase family.
  
 0.939
OI25_3525
enoyl-CoA hydratase/isomerase family protein; [I] COG1250 3-hydroxyacyl-CoA dehydrogenase.
  
 0.939
OI25_4608
Coenzyme A transferase family protein; [I] COG1788 Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit.
 
 
 0.925
OI25_1250
HMGL-like family protein; [E] COG0119 Isopropylmalate/homocitrate/citramalate synthases.
  
 
 0.923
OI25_6272
HMGL-like family protein; [E] COG0119 Isopropylmalate/homocitrate/citramalate synthases.
  
 
 0.923
OI25_894
HMGL-like family protein; [E] COG0119 Isopropylmalate/homocitrate/citramalate synthases.
  
 
 0.923
OI25_3869
UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain protein; [I] COG1250 3-hydroxyacyl-CoA dehydrogenase.
  
 
 0.914
Your Current Organism:
Paraburkholderia fungorum
NCBI taxonomy Id: 134537
Other names: ATCC BAA-463, Burkholderia fungorum, Burkholderia fungorum Coenye et al. 2001, Burkholderia sp. LMG 16225, Burkholderia sp. LMG 16307, Burkholderia sp. LMG16225, Burkholderia sp. LMG16307, CCUG 31961, CIP 107096, DSM 17061, JCM 21562, LMG 16225, LMG:16225, NBRC 102489, P. fungorum, Paraburkholderia fungorum (Coenye et al. 2001) Sawana et al. 2015, strain Croize P763-2
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