STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OI25_3020Tn3 transposase DDE domain protein; [L] COG4644 Transposase and inactivated derivatives, TnpA family. (994 aa)    
Predicted Functional Partners:
OI25_3019
Phage integrase family protein; [L] COG0582 Integrase.
 
     0.804
OI25_7234
DDE superendonuclease family protein; [L] COG3335 Transposase and inactivated derivatives.
 
     0.602
OI25_7501
DDE superendonuclease family protein; [L] COG3335 Transposase and inactivated derivatives.
 
     0.602
OI25_7557
Resolvase, N terminal domain protein; [L] COG1961 Site-specific recombinases, DNA invertase Pin homologs.
 
   
 0.495
OI25_7453
DDE superendonuclease family protein; [L] COG3335 Transposase and inactivated derivatives.
 
     0.494
OI25_7572
Resolvase, N terminal domain protein; [L] COG1961 Site-specific recombinases, DNA invertase Pin homologs.
 
   
 0.435
Your Current Organism:
Paraburkholderia fungorum
NCBI taxonomy Id: 134537
Other names: ATCC BAA-463, Burkholderia fungorum, Burkholderia fungorum Coenye et al. 2001, Burkholderia sp. LMG 16225, Burkholderia sp. LMG 16307, Burkholderia sp. LMG16225, Burkholderia sp. LMG16307, CCUG 31961, CIP 107096, DSM 17061, JCM 21562, LMG 16225, LMG:16225, NBRC 102489, P. fungorum, Paraburkholderia fungorum (Coenye et al. 2001) Sawana et al. 2015, strain Croize P763-2
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