Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
OI25_3494 | OI25_6951 | OI25_3494 | OI25_6951 | GPR1/FUN34/yaaH family protein; [S] COG1584 Predicted membrane protein. | Bacterial extracellular solute-binding family protein; [P] COG0725 ABC-type molybdate transport system, periplasmic component. | 0.429 |
OI25_3494 | acs-2 | OI25_3494 | OI25_3495 | GPR1/FUN34/yaaH family protein; [S] COG1584 Predicted membrane protein. | ac_CoA_lig_AcsA: acetate--CoA ligase; [I] COG0365 Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases. | 0.662 |
OI25_6951 | OI25_3494 | OI25_6951 | OI25_3494 | Bacterial extracellular solute-binding family protein; [P] COG0725 ABC-type molybdate transport system, periplasmic component. | GPR1/FUN34/yaaH family protein; [S] COG1584 Predicted membrane protein. | 0.429 |
acs-2 | OI25_3494 | OI25_3495 | OI25_3494 | ac_CoA_lig_AcsA: acetate--CoA ligase; [I] COG0365 Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases. | GPR1/FUN34/yaaH family protein; [S] COG1584 Predicted membrane protein. | 0.662 |