STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OI25_3974Type II secretion system (T2SS), F family protein; [U] COG4965 Flp pilus assembly protein TadB. (339 aa)    
Predicted Functional Partners:
OI25_3973
Type II secretion system (T2SS), F family protein; [NU] COG2064 Flp pilus assembly protein TadC.
 
  
 0.986
OI25_3976
Response regulator; [U] COG4963 Flp pilus assembly protein, ATPase CpaE.
 
  
 0.984
OI25_3975
Type II/IV secretion system family protein; [U] COG4962 Flp pilus assembly protein, ATPase CpaF.
 
  
 0.981
OI25_3972
TPR repeat family protein; [U] COG5010 Flp pilus assembly protein TadD, contains TPR repeats.
 
  
 0.965
cpaB
pilus_cpaB: Flp pilus assembly protein CpaB; [U] COG3745 Flp pilus assembly protein CpaB.
 
  
 0.949
OI25_6381
Type II secretion system (T2SS), F family protein; [NU] COG2064 Flp pilus assembly protein TadC.
 
  
 0.942
OI25_3977
Bacterial type II and III secretion system family protein; [U] COG4964 Flp pilus assembly protein, secretin CpaC; Belongs to the bacterial secretin family.
 
  
 0.927
cpaB-2
pilus_cpaB: Flp pilus assembly protein CpaB; [U] COG3745 Flp pilus assembly protein CpaB.
 
  
 0.926
OI25_6378
AAA domain protein; [U] COG4963 Flp pilus assembly protein, ATPase CpaE.
 
  
 0.924
OI25_6947
yhjQ family protein; [U] COG4963 Flp pilus assembly protein, ATPase CpaE.
 
  
 0.922
Your Current Organism:
Paraburkholderia fungorum
NCBI taxonomy Id: 134537
Other names: ATCC BAA-463, Burkholderia fungorum, Burkholderia fungorum Coenye et al. 2001, Burkholderia sp. LMG 16225, Burkholderia sp. LMG 16307, Burkholderia sp. LMG16225, Burkholderia sp. LMG16307, CCUG 31961, CIP 107096, DSM 17061, JCM 21562, LMG 16225, LMG:16225, NBRC 102489, P. fungorum, Paraburkholderia fungorum (Coenye et al. 2001) Sawana et al. 2015, strain Croize P763-2
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