STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OI25_4029Helix-turn-helix domain protein; [K] COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain. (360 aa)    
Predicted Functional Partners:
OI25_4024
[E] COG4583 Sarcosine oxidase gamma subunit.
 
    0.775
OI25_4025
soxA: sarcosine oxidase, alpha subunit; [E] COG0404 Glycine cleavage system T protein (aminomethyltransferase); Belongs to the GcvT family.
 
     0.771
OI25_4026
soxD: sarcosine oxidase, delta subunit; [E] COG4311 Sarcosine oxidase delta subunit.
 
    0.766
OI25_4027
soxB: sarcosine oxidase, beta subunit; [E] COG0665 Glycine/D-amino acid oxidases (deaminating).
 
     0.713
OI25_132
[K] COG2207 AraC-type DNA-binding domain-containing proteins.
 
 
 0.657
OI25_6995
[K] COG2207 AraC-type DNA-binding domain-containing proteins.
 
 
 0.617
OI25_5199
[K] COG2207 AraC-type DNA-binding domain-containing proteins.
 
 
 0.603
OI25_4009
Ring hydroxylating alpha subunit family protein; [PR] COG4638 Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit.
 
  
 0.566
OI25_4107
[K] COG2207 AraC-type DNA-binding domain-containing proteins.
 
 
 0.555
OI25_4008
2Fe-2S iron-sulfur cluster binding domain protein; [C] COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1.
 
  
 0.549
Your Current Organism:
Paraburkholderia fungorum
NCBI taxonomy Id: 134537
Other names: ATCC BAA-463, Burkholderia fungorum, Burkholderia fungorum Coenye et al. 2001, Burkholderia sp. LMG 16225, Burkholderia sp. LMG 16307, Burkholderia sp. LMG16225, Burkholderia sp. LMG16307, CCUG 31961, CIP 107096, DSM 17061, JCM 21562, LMG 16225, LMG:16225, NBRC 102489, P. fungorum, Paraburkholderia fungorum (Coenye et al. 2001) Sawana et al. 2015, strain Croize P763-2
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.